The joint graphical lasso for inverse covariance estimation across multiple classes
Summary
We consider the problem of estimating multiple related Gaussian graphical models from a high dimensional data set with observations belonging to distinct classes. We propose the joint graphical lasso, which borrows strength across the classes to estimate multiple graphical models that share certain characteristics, such as the locations or weights of non‐zero edges. Our approach is based on maximizing a penalized log‐likelihood. We employ generalized fused lasso or group lasso penalties and implement a fast alternating directions method of multipliers algorithm to solve the corresponding convex optimization problems. The performance of the method proposed is illustrated through simulated and real data examples.
Citing Literature
Number of times cited according to CrossRef: 248
- Xinyan Fan, Qingzhao Zhang, Shuangge Ma, Kuangnan Fang, Conditional score matching for high-dimensional partial graphical models, Computational Statistics & Data Analysis, 10.1016/j.csda.2020.107066, 153, (107066), (2021).
- Juho A. J. Kontio, Marko J. Rinta-aho, Mikko J. Sillanpää, Estimating Linear and Nonlinear Gene Coexpression Networks by Semiparametric Neighborhood Selection, Genetics, 10.1534/genetics.120.303186, 215, 3, (597-607), (2020).
- Veronica Tozzo, Annalisa Barla, Multi-parameters Model Selection for Network Inference, Complex Networks and Their Applications VIII, 10.1007/978-3-030-36687-2_47, (566-577), (2020).
- Sunil Kumar, Xiao-Kang Lun, Bernd Bodenmiller, María Rodríguez Martínez, Heinz Koeppl, Stabilized Reconstruction of Signaling Networks from Single-Cell Cue-Response Data, Scientific Reports, 10.1038/s41598-019-56444-5, 10, 1, (2020).
- Inyoung Kim, Liang Shan, Jiali Lin, Wenyu Gao, Byung‐Jun Kim, Hamdy Mahmoud, Multiple and multilevel graphical models, WIREs Computational Statistics , 10.1002/wics.1497, 12, 5, (2020).
- Aiying Zhang, Biao Cai, Wenxing Hu, Bochao Jia, Faming Liang, Tony W. Wilson, Julia M. Stephen, Vince D. Calhoun, Yu-Ping Wang, Joint Bayesian-Incorporating Estimation of Multiple Gaussian Graphical Models to Study Brain Connectivity Development in Adolescence, IEEE Transactions on Medical Imaging, 10.1109/TMI.2019.2926667, 39, 2, (357-365), (2020).
- Suchismita Mondal, Somak Dutta, Leonardo Crespo-Herrera, Julio Huerta-Espino, Hans J. Braun, Ravi P. Singh, Fifty years of semi-dwarf spring wheat breeding at CIMMYT: Grain yield progress in optimum, drought and heat stress environments, Field Crops Research, 10.1016/j.fcr.2020.107757, 250, (107757), (2020).
- G. Frusque, J. Jung, P. Borgnat, P. Goncalves, undefined, ICASSP 2020 - 2020 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 10.1109/ICASSP40776.2020.9054566, (5955-5959), (2020).
- Deepak Nag Ayyala, High-dimensional statistical inference: Theoretical development to data analytics, , 10.1016/bs.host.2020.02.003, (2020).
- Federica Conte, Giulio Costantini, Luca Rinaldi, Tiziano Gerosa, Luisa Girelli, Intellect is not that expensive: differential association of cultural and socio-economic factors with crystallized intelligence in a sample of Italian adolescents, Intelligence, 10.1016/j.intell.2020.101466, 81, (101466), (2020).
- Saurabh Sihag, Ali Tajer, undefined, 2020 IEEE International Symposium on Information Theory (ISIT), 10.1109/ISIT44484.2020.9174062, (1319-1324), (2020).
- Mansu Kim, Ji Hye Won, Jinyoung Youn, Hyunjin Park, Joint-Connectivity-Based Sparse Canonical Correlation Analysis of Imaging Genetics for Detecting Biomarkers of Parkinson’s Disease, IEEE Transactions on Medical Imaging, 10.1109/TMI.2019.2918839, 39, 1, (23-34), (2020).
- Yan Li, Dayou Liu, Tengfei Li, Yungang Zhu, Bayesian differential analysis of gene regulatory networks exploiting genetic perturbations, BMC Bioinformatics, 10.1186/s12859-019-3314-3, 21, 1, (2020).
- Kostas A. Papageorgiou, Maxim Likhanov, Giulio Costantini, Elina Tsigeman, Mikhail Zaleshin, Anna Budakova, Yulia Kovas, Personality, Behavioral strengths and difficulties and performance of adolescents with high achievements in science, literature, art and sports, Personality and Individual Differences, 10.1016/j.paid.2020.109917, 160, (109917), (2020).
- Yurika Upadhyaya, Linhui Xie, Paul Salama, Sha Cao, Kwangsik Nho, Andrew J. Saykin, Jingwen Yan, for the Alzheimer’s Disease Neuroimaging In, Differential co-expression analysis reveals early stage transcriptomic decoupling in alzheimer’s disease, BMC Medical Genomics, 10.1186/s12920-020-0689-y, 13, S5, (2020).
- Qingyang Liu, Yuping Zhang, Joint estimation of heterogeneous exponential Markov Random Fields through an approximate likelihood inference, Journal of Statistical Planning and Inference, 10.1016/j.jspi.2020.04.003, (2020).
- Merry K P, Kajal Tanchak, Typecasting Of Microarray Data Using Machine Learning Algorithms, Procedia Computer Science, 10.1016/j.procs.2020.04.279, 171, (2572-2580), (2020).
- Mohammad S. Rahman, Ann E. Nicholson, Gholamreza Haffari, Inferring Two-Level Hierarchical Gaussian Graphical Models to Discover Shared and Context-Specific Conditional Dependencies from High-Dimensional Heterogeneous Data, SN Computer Science, 10.1007/s42979-020-00224-w, 1, 4, (2020).
- Mansu Kim, Ji Sun Kim, Jinyoung Youn, Hyunjin Park, Jin Whan Cho, GraphNet-based imaging biomarker model to explain levodopa-induced dyskinesia in Parkinson's disease, Computer Methods and Programs in Biomedicine, 10.1016/j.cmpb.2020.105713, (105713), (2020).
- Nguyen Tran, Oleksii Abramenko, Alexander Jung, On the Sample Complexity of Graphical Model Selection From Non-Stationary Samples, IEEE Transactions on Signal Processing, 10.1109/TSP.2019.2956687, 68, (17-32), (2020).
- Wessel N. van Wieringen, Koen A. Stam, Carel F.W. Peeters, Mark A. van de Wiel, Updating of the Gaussian graphical model through targeted penalized estimation, Journal of Multivariate Analysis, 10.1016/j.jmva.2020.104621, (104621), (2020).
- Yangjing Zhang, Ning Zhang, Defeng Sun, Kim-Chuan Toh, A Proximal Point Dual Newton Algorithm for Solving Group Graphical Lasso Problems, SIAM Journal on Optimization, 10.1137/19M1267830, 30, 3, (2197-2220), (2020).
- Bochao Jia, Faming Liang, Joint estimation of multiple mixed graphical models for pan‐cancer network analysis, Stat, 10.1002/sta4.271, 9, 1, (2020).
- Jitendra K. Tugnait, Deviance Tests for Graph Estimation From Multi-Attribute Gaussian Data, IEEE Transactions on Signal Processing, 10.1109/TSP.2020.3023575, 68, (1-16), (2020).
- Eva-Maria Stelzer, Jan Höltge, Ningning Zhou, Andreas Maercker, Clare Killikelly, Cross-cultural generalizability of the ICD-11 PGD symptom network: Identification of central symptoms and culturally specific items across German-speaking and Chinese bereaved, Comprehensive Psychiatry, 10.1016/j.comppsych.2020.152211, (152211), (2020).
- Nuosi Wu, Fu Yin, Le Ou-Yang, Zexuan Zhu, Weixin Xie, Joint learning of multiple gene networks from single-cell gene expression data, Computational and Structural Biotechnology Journal, 10.1016/j.csbj.2020.09.004, 18, (2583-2595), (2020).
- Carmen Díaz-Batanero, Antón Aluja, Pablo Sayans-Jiménez, Eva Baillés, Fermín Fernández-Calderón, Josep M. Peri, Gemma Vall, Óscar M. Lozano, Fernando Gutiérrez, Alternative DSM-5 Model for Personality Disorders Through the Lens of an Empirical Network Model , Assessment, 10.1177/1073191119897118, (107319111989711), (2020).
- Jia-Juan Tu, Le Ou-Yang, Hong Yan, Xiao-Fei Zhang, Hong Qin, Joint reconstruction of multiple gene networks by simultaneously capturing inter-tumor and intra-tumor heterogeneity, Bioinformatics, 10.1093/bioinformatics/btaa014, (2020).
- Xinghao Qiao, Cheng Qian, Gareth M James, Shaojun Guo, Doubly functional graphical models in high dimensions, Biometrika, 10.1093/biomet/asz072, (2020).
- Christine B. Peterson, Nathan Osborne, Francesco C. Stingo, Pierrick Bourgeat, James D. Doecke, Marina Vannucci, Bayesian modeling of multiple structural connectivity networks during the progression of Alzheimer's disease, Biometrics, 10.1111/biom.13235, 0, 0, (2020).
- Mohammad H. Afzali, Sherry Heather Stewart, Jean R. Séguin, Patricia Conrod, The Network Constellation of Personality and Substance Use: Evolution from Early to Late Adolescence, European Journal of Personality, 10.1002/per.2245, 0, 0, (2020).
- Ali Shojaie, Differential network analysis: A statistical perspective, WIREs Computational Statistics , 10.1002/wics.1508, 0, 0, (2020).
- Ruixuan Rachel Zhou, Liewei Wang, Sihai Dave Zhao, Estimation and inference for the indirect effect in high-dimensional linear mediation models, Biometrika, 10.1093/biomet/asaa016, (2020).
- Kangning Dong, Shihua Zhang, Joint reconstruction of cis-regulatory interaction networks across multiple tissues using single-cell chromatin accessibility data, Briefings in Bioinformatics, 10.1093/bib/bbaa120, (2020).
- Desiree Y. Phua, Helen Chen, Yap Seng Chong, Peter D. Gluckman, Birit F. P. Broekman, Michael J. Meaney, Network Analyses of Maternal Pre- and Post-Partum Symptoms of Depression and Anxiety, Frontiers in Psychiatry, 10.3389/fpsyt.2020.00785, 11, (2020).
- Lin Zhang, Andrew DiLernia, Karina Quevedo, Jazmin Camchong, Kelvin Lim, Wei Pan, A random covariance model for bi‐level graphical modeling with application to resting‐state fMRI data, Biometrics, 10.1111/biom.13364, 0, 0, (2020).
- Robert Jiqi Zhang, James H Liu, Gary Brown, Homero Gil de Zúñiga, A Network Analysis of Global Trust Across 11 Democratic Countries, International Journal of Public Opinion Research, 10.1093/ijpor/edaa002, (2020).
- Marcelo T. Berlim, Stephane Richard-Devantoy, Nicole Rodrigues dos Santos, Gustavo Turecki, The network structure of core depressive symptom-domains in major depressive disorder following antidepressant treatment: a randomized clinical trial, Psychological Medicine, 10.1017/S0033291720001002, (1-15), (2020).
- Zongliang Hu, Zhishui Hu, Kai Dong, Tiejun Tong, Yuedong Wang, A shrinkage approach to joint estimation of multiple covariance matrices, Metrika, 10.1007/s00184-020-00781-3, (2020).
- Mehran Aflakparast, Mathisca de Gunst, Wessel van Wieringen, Analysis of Twitter data with the Bayesian fused graphical lasso, PLOS ONE, 10.1371/journal.pone.0235596, 15, 7, (e0235596), (2020).
- So Young Song, Youn-Kyung Kim, Factors Influencing Consumers’ Intention to Adopt Fashion Robot Advisors: Psychological Network Analysis, Clothing and Textiles Research Journal, 10.1177/0887302X20941261, (0887302X2094126), (2020).
- Joshua Lukemire, Suprateek Kundu, Giuseppe Pagnoni, Ying Guo, Bayesian Joint Modeling of Multiple Brain Functional Networks, Journal of the American Statistical Association, 10.1080/01621459.2020.1796357, (1-13), (2020).
- Qingyang Zhang, Testing Differential Gene Networks under Nonparanormal Graphical Models with False Discovery Rate Control, Genes, 10.3390/genes11020167, 11, 2, (167), (2020).
- Liang Shan, Zhilei Qiao, Lulu Cheng, Inyoung Kim, Joint Estimation of the Two-Level Gaussian Graphical Models Across Multiple Classes, Journal of Computational and Graphical Statistics, 10.1080/10618600.2019.1694522, (1-18), (2020).
- Xinyan Fan, Kuangnan Fang, Shuangge Ma, Qingzhao Zhang, Integrating approximate single factor graphical models, Statistics in Medicine, 10.1002/sim.8408, 39, 2, (146-155), (2019).
- Shanghong Xie, Xiang Li, Peter McColgan, Rachael I. Scahill, Donglin Zeng, Yuanjia Wang, Identifying disease‐associated biomarker network features through conditional graphical model, Biometrics, 10.1111/biom.13201, 76, 3, (995-1006), (2019).
- Matthias Knefel, Brigitte Lueger‐Schuster, Jonathan Bisson, Thanos Karatzias, Evaldas Kazlauskas, Neil P. Roberts, A Cross‐Cultural Comparison of ICD‐11 Complex Posttraumatic Stress Disorder Symptom Networks in Austria, the United Kingdom, and Lithuania, Journal of Traumatic Stress, 10.1002/jts.22361, 33, 1, (41-51), (2019).
- Eugen Pircalabelu, Gerda Claeskens, Lourens J. Waldorp, Zoom‐in–out joint graphical lasso for different coarseness scales, Journal of the Royal Statistical Society: Series C (Applied Statistics), 10.1111/rssc.12378, 69, 1, (47-67), (2019).
- Kevin McGregor, Aurélie Labbe, Celia M T Greenwood, MDiNE: a model to estimate differential co-occurrence networks in microbiome studies, Bioinformatics, 10.1093/bioinformatics/btz824, 36, 6, (1840-1847), (2019).
- Qingyang Zhang, Direct estimation of differential networks under high‐dimensional nonparanormal graphical models, Canadian Journal of Statistics, 10.1002/cjs.11526, 48, 2, (187-203), (2019).
- Yingchao Dou, Cyrille Kouklovsky, Vincent Gandon, Guillaume Vincent, Enantioselective Total Synthesis of Cymoside through a Bioinspired Oxidative Cyclization of a Strictosidine Derivative, Angewandte Chemie International Edition, 10.1002/anie.201912812, 59, 4, (1527-1531), (2019).
- Jitendra K. Tugnait, undefined, ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 10.1109/ICASSP.2019.8682867, (2952-2956), (2019).
- Mostafa Tavassolipour, Seyed Abolfazl Motahari, Mohammad-Taghi Manzuri Shalmani, Learning of Tree-Structured Gaussian Graphical Models on Distributed Data Under Communication Constraints, IEEE Transactions on Signal Processing, 10.1109/TSP.2018.2876325, 67, 1, (17-28), (2019).
- Giulio Costantini, Juliette Richetin, Emanuele Preti, Erica Casini, Sacha Epskamp, Marco Perugini, Stability and variability of personality networks. A tutorial on recent developments in network psychometrics, Personality and Individual Differences, 10.1016/j.paid.2017.06.011, 136, (68-78), (2019).
- Jai Woo Lee, Erika L. Moen, Tracy Punshon, Anne G. Hoen, Delisha Stewart, Hongzhe Li, Margaret R. Karagas, Jiang Gui, An Integrated Gaussian Graphical Model to evaluate the impact of exposures on metabolic networks, Computers in Biology and Medicine, 10.1016/j.compbiomed.2019.103417, (103417), (2019).
- Fenfen Ge, Minlan Yuan, Ying Li, Jun Zhang, Wei Zhang, Changes in the Network Structure of Posttraumatic Stress Disorder Symptoms at Different Time Points Among Youth Survivors: A Network Analysis, Journal of Affective Disorders, 10.1016/j.jad.2019.08.065, (2019).
- Hao He, Shaolong Cao, Ji-gang Zhang, Hui Shen, Yu-Ping Wang, Hong-wen Deng, A Statistical Test for Differential Network Analysis Based on Inference of Gaussian Graphical Model, Scientific Reports, 10.1038/s41598-019-47362-7, 9, 1, (2019).
- Duy Nhat Phan, Hoai An Le Thi, Group variable selection via regularization and application to optimal scoring , Neural Networks, 10.1016/j.neunet.2019.05.011, (2019).
- Pablo Cordero, Victoria N. Parikh, Elizabeth T. Chin, Ayca Erbilgin, Michael J. Gloudemans, Ching Shang, Yong Huang, Alex C. Chang, Kevin S. Smith, Frederick Dewey, Kathia Zaleta, Michael Morley, Jeff Brandimarto, Nicole Glazer, Daryl Waggott, Aleksandra Pavlovic, Mingming Zhao, Christine S. Moravec, W. H. Wilson Tang, Jamie Skreen, Christine Malloy, Sridhar Hannenhalli, Hongzhe Li, Scott Ritter, Mingyao Li, Daniel Bernstein, Andrew Connolly, Hakon Hakonarson, Aldons J. Lusis, Kenneth B. Margulies, Anna A. Depaoli-Roach, Stephen B. Montgomery, Matthew T. Wheeler, Thomas Cappola, Euan A. Ashley, Pathologic gene network rewiring implicates PPP1R3A as a central regulator in pressure overload heart failure, Nature Communications, 10.1038/s41467-019-10591-5, 10, 1, (2019).
- Jitendra K. Tugnait, Edge Exclusion Tests for Improper Complex Gaussian Graphical Model Selection, IEEE Transactions on Signal Processing, 10.1109/TSP.2019.2916068, 67, 13, (3547-3560), (2019).
- Le Ou-Yang, Xiao-Fei Zhang, Xing-Ming Zhao, Debby D. Wang, Fu Lee Wang, Baiying Lei, Hong Yan, Joint Learning of Multiple Differential Networks With Latent Variables, IEEE Transactions on Cybernetics, 10.1109/TCYB.2018.2845838, 49, 9, (3494-3506), (2019).
- Jia-Juan Tu, Le Ou-Yang, Xiaohua Hu, Xiao-Fei Zhang, Inferring Gene Network Rewiring by Combining Gene Expression and Gene Mutation Data, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10.1109/TCBB.2018.2834529, 16, 3, (1042-1048), (2019).
- A. Skripnikov, G. Michailidis, Regularized joint estimation of related vector autoregressive models, Computational Statistics & Data Analysis, 10.1016/j.csda.2019.05.007, (2019).
- Saurabh Sihag, Ali Tajer, undefined, ICASSP 2019 - 2019 IEEE International Conference on Acoustics, Speech and Signal Processing (ICASSP), 10.1109/ICASSP.2019.8682199, (5292-5296), (2019).
- Tyler Grimes, S. Steven Potter, Somnath Datta, Integrating gene regulatory pathways into differential network analysis of gene expression data, Scientific Reports, 10.1038/s41598-019-41918-3, 9, 1, (2019).
- Rossella Di Pierro, Giulio Costantini, Ilaria Maria Antonietta Benzi, Fabio Madeddu, Emanuele Preti, Grandiose and entitled, but still fragile: A network analysis of pathological narcissistic traits, Personality and Individual Differences, 10.1016/j.paid.2018.04.003, 140, (15-20), (2019).
- Layla Majzoobi, Farshad Lahouti, Vahid Shah-Mansouri, Analysis of Distributed ADMM Algorithm for Consensus Optimization in Presence of Node Error, IEEE Transactions on Signal Processing, 10.1109/TSP.2019.2896266, 67, 7, (1774-1784), (2019).
- Frank Dondelinger, Sach Mukherjee, Statistical Network Inference for Time-Varying Molecular Data with Dynamic Bayesian Networks, Gene Regulatory Networks, 10.1007/978-1-4939-8882-2_2, (25-48), (2019).
- Jitendra K. Tugnait, undefined, 2019 IEEE 29th International Workshop on Machine Learning for Signal Processing (MLSP), 10.1109/MLSP.2019.8918691, (1-6), (2019).
- Yurika Upadhyaya, Linhui Xie, Paul Salama, Kwangsik Nho, Andrew J. Saykin, Jingwen Yan, undefined, 2019 IEEE EMBS International Conference on Biomedical & Health Informatics (BHI), 10.1109/BHI.2019.8834551, (1-4), (2019).
- Jitendra K. Tugnait, Edge Exclusion Tests for Graphical Model Selection: Complex Gaussian Vectors and Time Series, IEEE Transactions on Signal Processing, 10.1109/TSP.2019.2935898, 67, 19, (5062-5077), (2019).
- Yueliang Liu, Kangyong You, Wenbin Guo, Tao Peng, Wenbo Wang, undefined, ICC 2019 - 2019 IEEE International Conference on Communications (ICC), 10.1109/ICC.2019.8761058, (1-6), (2019).
- Deborah Chasman, Nisha Iyer, Alireza Fotuhi Siahpirani, Maria Estevez Silva, Ethan Lippmann, Brian McIntosh, Mitchell D. Probasco, Peng Jiang, Ron Stewart, James A. Thomson, Randolph S. Ashton, Sushmita Roy, Inferring Regulatory Programs Governing Region Specificity of Neuroepithelial Stem Cells during Early Hindbrain and Spinal Cord Development, Cell Systems, 10.1016/j.cels.2019.05.012, (2019).
- Ben Sherwood, Aaron J. Molstad, Sumanta Singha, Asymptotic properties of concave -norm group penalties , Statistics & Probability Letters, 10.1016/j.spl.2019.108631, (108631), (2019).
- Wenjing Wang, Xin Zhang, Lexin Li, Common reducing subspace model and network alternation analysis, Biometrics, 10.1111/biom.13099, 75, 4, (1109-1120), (2019).
- Yanli Yuan, De Wen Soh, Howard H. Yang, Tony Q. S. Quek, Learning Overlapping Community-based Networks, IEEE Transactions on Signal and Information Processing over Networks, 10.1109/TSIPN.2019.2936361, (1-1), (2019).
- Liang Zhao, Olga Gkountouna, Dieter Pfoser, Spatial Auto-regressive Dependency Interpretable Learning Based on Spatial Topological Constraints, ACM Transactions on Spatial Algorithms and Systems, 10.1145/3339823, 5, 3, (1-28), (2019).
- Saurabh Sihag, Ali Tajer, undefined, 2019 IEEE International Symposium on Information Theory (ISIT), 10.1109/ISIT.2019.8849254, (1307-1311), (2019).
- Michael Altenbuchinger, Antoine Weihs, John Quackenbush, Hans Jörgen Grabe, Helena U. Zacharias, Gaussian and Mixed Graphical Models as (multi-)omics data analysis tools, Biochimica et Biophysica Acta (BBA) - Gene Regulatory Mechanisms, 10.1016/j.bbagrm.2019.194418, (194418), (2019).
- ShaoBin Liu, JianFeng Ma, XiaoQin Feng, undefined, ICC 2019 - 2019 IEEE International Conference on Communications (ICC), 10.1109/ICC.2019.8761975, (1-6), (2019).
- Suprateek Kundu, Joshua Lukemire, Yikai Wang, Ying Guo, A Novel Joint Brain Network Analysis Using Longitudinal Alzheimer’s Disease Data, Scientific Reports, 10.1038/s41598-019-55818-z, 9, 1, (2019).
- Haluk Dogan, Zeynep Hakguder, Stephen Scott, Juan Cui, undefined, 2019 IEEE International Conference on Bioinformatics and Biomedicine (BIBM), 10.1109/BIBM47256.2019.8983024, (2729-2734), (2019).
- Maryam Shahdoust, Hossein Mahjub, Hamid Pezeshk, Mehdi Sadeghi, A Network-based Comparison between Molecular Apocrine Breast Cancer Tumor and Basal and Luminal Tumors by Joint Graphical Lasso, IEEE/ACM Transactions on Computational Biology and Bioinformatics, 10.1109/TCBB.2019.2911074, (1-1), (2019).
- Shun He, Minghua Deng, Direct interaction network and differential network inference from compositional data via lasso penalized D-trace loss, PLOS ONE, 10.1371/journal.pone.0207731, 14, 7, (e0207731), (2019).
- Sung Won Han, Sunghoon Park, Hua Zhong, Eun-Seok Ryu, Pei Wang, Sehee Jung, Jayeon Lim, Jeewhan Yoon, SungHwan Kim, Estimation of joint directed acyclic graphs with lasso family for gene networks, Communications in Statistics - Simulation and Computation, 10.1080/03610918.2019.1618869, (1-15), (2019).
- Bochao Jia, Faming Liang, Fast hybrid Bayesian integrative learning of multiple gene regulatory networks for type 1 diabetes, Biostatistics, 10.1093/biostatistics/kxz027, (2019).
- Nuosi Wu, Jiang Huang, Xiao-Fei Zhang, Le Ou-Yang, Shan He, Zexuan Zhu, Weixin Xie, Weighted Fused Pathway Graphical Lasso for Joint Estimation of Multiple Gene Networks, Frontiers in Genetics, 10.3389/fgene.2019.00623, 10, (2019).
- Xin Zhou, Xiaodong Cai, Inference of differential gene regulatory networks based on gene expression and genetic perturbation data, Bioinformatics, 10.1093/bioinformatics/btz529, (2019).
- Zhiguang Huo, Li Zhu, Tianzhou Ma, Hongcheng Liu, Song Han, Daiqing Liao, Jinying Zhao, George Tseng, Two-Way Horizontal and Vertical Omics Integration for Disease Subtype Discovery, Statistics in Biosciences, 10.1007/s12561-019-09242-6, (2019).
- Bradley S. Price, Charles J. Geyer, Adam J. Rothman, Automatic Response Category Combination in Multinomial Logistic Regression, Journal of Computational and Graphical Statistics, 10.1080/10618600.2019.1585258, (1-9), (2019).
- Xiao Guo, Hai Zhang, Structured learning of time-varying networks with application to PM 2.5 data , Communications in Statistics - Simulation and Computation, 10.1080/03610918.2019.1582780, (1-19), (2019).
- Xiao-Fei Zhang, Le Ou-Yang, Shuo Yang, Xiaohua Hu, Hong Yan, DiffNetFDR: differential network analysis with false discovery rate control, Bioinformatics, 10.1093/bioinformatics/btz051, (2019).
- Priyam Das, Christine B Peterson, Kim-Anh Do, Rehan Akbani, Veerabhadran Baladandayuthapani, NExUS: Bayesian simultaneous network estimation across unequal sample sizes, Bioinformatics, 10.1093/bioinformatics/btz636, (2019).
- Jilei Yang, Jie Peng, Estimating Time-Varying Graphical Models, Journal of Computational and Graphical Statistics, 10.1080/10618600.2019.1647848, (1-12), (2019).
- Mengyu Xu, Xiaohui Chen, Wei Biao Wu, Estimation of Dynamic Networks for High-Dimensional Nonstationary Time Series, Entropy, 10.3390/e22010055, 22, 1, (55), (2019).
- Duo Jiang, Courtney R. Armour, Chenxiao Hu, Meng Mei, Chuan Tian, Thomas J. Sharpton, Yuan Jiang, Microbiome Multi-Omics Network Analysis: Statistical Considerations, Limitations, and Opportunities, Frontiers in Genetics, 10.3389/fgene.2019.00995, 10, (2019).
- Jonas M. B. Haslbeck, Denny Borsboom, Lourens J. Waldorp, Moderated Network Models, Multivariate Behavioral Research, 10.1080/00273171.2019.1677207, (1-32), (2019).
- Mahammad Humayoo, Xueqi Cheng, Parameter Estimation with the Ordered ℓ2 Regularization via an Alternating Direction Method of Multipliers, Applied Sciences, 10.3390/app9204291, 9, 20, (4291), (2019).
- Amit Lazarov, Benjamin Suarez-Jimenez, Ofir Levy, Daniel D. L. Coppersmith, Gadi Lubin, Daniel S. Pine, Yair Bar-Haim, Rany Abend, Yuval Neria, Symptom structure of PTSD and co-morbid depressive symptoms – a network analysis of combat veteran patients, Psychological Medicine, 10.1017/S0033291719002034, (1-17), (2019).
- Xinghao Qiao, Shaojun Guo, Gareth M. James, Functional Graphical Models, Journal of the American Statistical Association, 10.1080/01621459.2017.1390466, 114, 525, (211-222), (2018).
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