Volume 68, Issue 5
Original Article

Multi‐dimensional penalized hazard model with continuous covariates: applications for studying trends and social inequalities in cancer survival

Mathieu Fauvernier

Corresponding Author

E-mail address: mathieu.fauvernier@chu-lyon.fr

Hospices Civils de Lyon and Université Lyon 1, France

Address for correspondence: Mathieu Fauvernier, Service de Biostatistique—Bioinformatique, Centre Hospitalier Lyon Sud, 165 Chemin du Grand Revoyet, F‐69130 Pierre‐Benite, Lyon, France. E‐mail: mathieu.fauvernier@chu-lyon.frSearch for more papers by this author
Laurent Roche

Hospices Civils de Lyon and Université Lyon 1, France

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Zoé Uhry

Santé Publique France, Saint Maurice, Hospices Civils de Lyon and Université Lyon 1, France

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Laure Tron

Centre Hospitalier Universitaire de Caen, Université de Caen Normandie, Caen, France

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Nadine Bossard

Hospices Civils de Lyon and Université Lyon 1, France

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Laurent Remontet

Hospices Civils de Lyon and Université Lyon 1, France

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First published: 22 July 2019
Citations: 4

Summary

Describing the dynamics of patient mortality hazard is a major concern for cancer epidemiologists. In addition to time and age, other continuous covariates have often to be included in the model. For example, survival trend analyses and socio‐economic studies deal respectively with the year of diagnosis and a deprivation index. Taking advantage of a recent theoretical framework for general smooth models, the paper proposes a penalized approach to hazard and excess hazard models in time‐to‐event analyses. The baseline hazard and the functional forms of the covariates were specified by using penalized natural cubic regression splines with associated quadratic penalties. Interactions between continuous covariates and time‐dependent effects were dealt with by forming a tensor product smooth. The smoothing parameters were estimated by optimizing either the Laplace approximate marginal likelihood criterion or the likelihood cross‐validation criterion. The regression parameters were estimated by direct maximization of the penalized likelihood of the survival model, which avoids data augmentation and the Poisson likelihood approach. The implementation proposed was evaluated on simulations and applied to real data. It was found to be numerically stable, efficient and useful for choosing the appropriate degree of complexity in overall survival and net survival contexts; moreover, it simplified the model building process.

Number of times cited according to CrossRef: 4

  • Link-based survival additive models under mixed censoring to assess risks of hospital-acquired infections, Computational Statistics & Data Analysis, 10.1016/j.csda.2020.107092, 155, (107092), (2021).
  • Total hip arthroplasty performed by direct anterior approach – Does experience influence the learning curve?, SICOT-J, 10.1051/sicotj/2020015, 6, (15), (2020).
  • Prediction of cancer survival for cohorts of patients most recently diagnosed using multi-model inference, Statistical Methods in Medical Research, 10.1177/0962280220934501, 29, 12, (3605-3622), (2020).
  • survPen: an R package for hazard and excess hazard modelling with multidimensional penalized splines, Journal of Open Source Software, 10.21105/joss.01434, 4, 40, (1434), (2019).